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CBMPy release 0.8.8 update 1

Authors: Olivier, Brett; Gottstein, Willi; Teusink, Bas; Molenaar, Douwe;

CBMPy release 0.8.8 update 1

Abstract

Intermediate release that includes bug fixes, code cleanup and new features to support endPoint FBA. Has alpha support for Flux Balance Constraints V3 features including quadratic objectives, non-stoichiometric user constraints and KeyValue pairs. Try the latest format with cbmpy.writeSBML3FBCV3. Many thanks to Steven Wijnen for his debugging, testing and help with the QP, constraints and FBCV3 implementation. This release supports his dcFBA/endPointFBA https://github.com/SystemsBioinformatics/dynamic-community-fba package . See https://systemsbioinformatics.github.io/cbmpy/ and the README.md for more details. Install This version is only available from PyPI, install using: pip install cbmpy What's Changed start 0.8.5 by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/53 Merge pull request https://github.com/SystemsBioinformatics/cbmpy/pull/54 from SystemsBioinformatics/master by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/55 Add support for FBCv3 by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/58 CBMPy 0.8.7 dev merge by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/60 tweaked 0.8.8 for a sane pypi release by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/61 fixed typo by @bgoli in https://github.com/SystemsBioinformatics/cbmpy/pull/62 Full Changelog: https://github.com/SystemsBioinformatics/cbmpy/compare/0.8.4...0.8.8.1

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Keywords

python, flux balance analysis, systems biology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average