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Snakemake rna-seq template

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 07 Sep 2023 English Publisher:Zenodo
Authors: Aurelien Ginolhac;

doi: 10.5281/zenodo.10079215 , 10.5281/zenodo.10065728 , 10.5281/zenodo.8325394 , 10.5281/zenodo.10040723 , 10.5281/zenodo.8325393

Snakemake rna-seq template

Abstract

RNA-seq analysis with Snakemake Snakemake is a workflow manager system for creating reproducible and scalable pipelines. This repository allows you to perform a *RNA-seq analysis*, from raw reads to differential expression and is customised from this template by Johannes Köster. Reads can be supplied either as single-end or paired-end and optionally with technical replicates. Sequencing files from technical replicates are merged at the mapping step See full description there https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-rna-seq

Related Organizations
Keywords

RNA-seq, Snakemake

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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