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ZENODO
Other ORP type . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Other ORP type . 2023
License: CC BY
Data sources: Datacite
ZENODO
Other ORP type . 2023
License: CC BY
Data sources: Datacite
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Metabarcoding data processing using dada2 - rbcL

appsOther research productkeyboard_double_arrow_right Other ORP type 19 Oct 2023Publisher:Zenodo
Authors: Fray, Davis; McGovern, Callahan; Casamatta, Dale; Hamsher, Sarah;

doi: 10.5281/zenodo.10019982 , 10.5281/zenodo.10019983

Metabarcoding data processing using dada2 - rbcL

Abstract

Using the code in this file, we will process rbcL metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to remove primers, and then use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign these to taxonomy using DADA2 and a reference database.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average