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ZENODO
Dataset . 2015
License: CC 0
Data sources: ZENODO
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Dataset . 2015
License: CC 0
Data sources: Datacite
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Data from: Genetic variation, simplicity and evolutionary constraints for function-valued traits

Authors: Kingsolver, Joel G.; Heckman, Nancy; Zhang, Jonathan; Carter, Patrick A.; Knies, Jennifer L.; Stinchcombe, John R.; Meyer, Karin;

Data from: Genetic variation, simplicity and evolutionary constraints for function-valued traits

Abstract

Understanding the patterns of genetic variation and constraint for continuous reaction norms, growth trajectories, and other function-valued traits is challenging. We describe and illustrate a recent analytical method, simple basis analysis (SBA), that uses the genetic variance-covariance (G) matrix to identify “simple” directions of genetic variation and genetic constraints that have straightforward biological interpretations. We discuss the parallels between the eigenvectors (principal components) identified by principal components analysis (PCA) and the simple basis (SB) vectors identified by SBA. We apply these methods to estimated G matrices obtained from 10 studies of thermal performance curves and growth curves. Our results suggest that variation in overall size across all ages represented most of the genetic variance in growth curves. In contrast, variation in overall performance across all temperatures represented less than one-third of the genetic variance in thermal performance curves in all cases, and genetic trade-offs between performance at higher versus lower temperatures were often important. The analyses also identify potential genetic constraints on patterns of early and later growth in growth curves. We suggest that SBA can be a useful complement or alternative to PCA for identifying biologically interpretable directions of genetic variation and constraint in function-valued traits.

RCodeZIP archive with R code, examples, and information on how to assess variability in an estimate that depends on an estimated covariance matrix.GmatricesG Matrices analyzed in the paper

Keywords

Mus musculus domesticus, Tribolium castaneum, Pieris rapae, G4 phage, Salmonella, Aphidius ervi, E. coli, Genetics: quantitative, Pinus taeda, Impatiens capensis, Ambystoma macrodactylum

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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