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Data Models for Annotating Biomedical Scholarly Publications: the Case of CORD-19

Authors: Houcemeddine Turki; Mohamed Ali Hadj Taieb; Alejandro Piad-Morffis; Mohamed Ben Aouicha; René Fabrice Bile;

Data Models for Annotating Biomedical Scholarly Publications: the Case of CORD-19

Abstract

Semantic text annotations have been a key factor for supporting computer applications ranging from knowledge graph construction to biomedical question answering. In this systematic review, we provide an analysis of the data models that have been applied to semantic annotation projects for the scholarly publications available in the CORD-19 dataset, an open database of the full texts of scholarly publications about COVID-19. Based on Google Scholar and the screening of specific research venues, we retrieve seventeen publications on the topic mostly from the United States of America. Subsequently, we outline and explain the inline semantic annotation models currently applied on the full texts of biomedical scholarly publications. Then, we discuss the data models currently used with reference to semantic annotation projects on the CORD-19 dataset to provide interesting directions for the development of semantic annotation models and projects.

Keywords

Semantic relation annotation, Semantic annotations, Named entity annotation, Semantic relations, CORD-19, Annotation models

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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