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Journal of Neurochemistry
Article . 2025 . Peer-reviewed
License: Wiley Online Library User Agreement
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Journal of Neurochemistry
Other literature type . 2025
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Considerations for Spatial Omics, Metabolite Analyses, and Tissue‐Harvesting Artifacts

Authors: Jörg Hanrieder; Ramon Sun; Shane R. Ellis; Jens Pahnke; Jeffrey N. Savas;

Considerations for Spatial Omics, Metabolite Analyses, and Tissue‐Harvesting Artifacts

Abstract

ABSTRACT Within the emerging field of spatial biology, novel analytical technologies are increasingly demonstrated for mapping neurochemical changes in situ. These tools comprise spatial mass spectrometry (MS imaging, MSI), spatial transcriptomics using in situ sequencing, probe‐based spatial omics, as well as laser microdissection and single cell‐type isolation interfaced with either mass spectrometry or next generation RNA sequencing (NGS) for single cell‐type analysis. These approaches significantly exceed the neurochemical methods that are commonly used with respect to molecular specificity and spatial precision. However, despite all these advancements, close attention has still to be paid to appropriate tissue harvesting and enzyme inactivation methods to avoid degradation of neurochemicals and the generation of artifacts, and because of euthanasia or postmortem ischemia. In this editorial, we aim to present the readership with considerations in lieu of emerging analytical and spatial molecular techniques, as well as highlight the relevance of appropriate tissue preparation. Importantly, we discuss different quenching techniques and their compatibility as well as limitations for novel spatial analyses that require morphologically pristine tissues. image

Keywords

Humans, Animals, Metabolomics, Artifacts, Mass Spectrometry

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average