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Unitopatho, A Labeled Histopathological Dataset for Colorectal Polyps Classification and Adenoma Dysplasia Grading

Authors: Barbano, Carlo Alberto; Perlo, Daniele; Tartaglione, Enzo; Fiandrotti, Attilio; Bertero, Luca; Cassoni, Paola; Grangetto, Marco;

Unitopatho, A Labeled Histopathological Dataset for Colorectal Polyps Classification and Adenoma Dysplasia Grading

Abstract

Histopathological characterization of colorectal polyps allows to tailor patients' management and follow up with the ultimate aim of avoiding or promptly detecting an invasive carcinoma. Colorectal polyps characterization relies on the histological analysis of tissue samples to determine the polyps malignancy and dysplasia grade. Deep neural networks achieve outstanding accuracy in medical patterns recognition, however they require large sets of annotated training images. We introduce UniToPatho, an annotated dataset of 9536 hematoxylin and eosin (H&E) stained patches extracted from 292 whole-slide images, meant for training deep neural networks for colorectal polyps classification and adenomas grading. We present our dataset and provide insights on how to tackle the problem of automatic colorectal polyps characterization.

5 pages, 3 figures

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Keywords

FOS: Computer and information sciences, Computer Science - Machine Learning, Deep Learning; Multi Resolution; Colorectal polyps; Colorectal Adenomas; Digital Pathology, I.2.6, Computer Vision and Pattern Recognition (cs.CV), Image and Video Processing (eess.IV), Computer Science - Computer Vision and Pattern Recognition, [INFO] Computer Science [cs], Electrical Engineering and Systems Science - Image and Video Processing, I.2.0, Machine Learning (cs.LG), FOS: Electrical engineering, electronic engineering, information engineering, I.2.0; I.2.6

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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