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Discriminative Pattern Mining for Breast Cancer Histopathology Image Classification via Fully Convolutional Autoencoder

Authors: Xingyu Li; Marko Radulovic; Ksenija Kanjer; Konstantinos N. Plataniotis;

Discriminative Pattern Mining for Breast Cancer Histopathology Image Classification via Fully Convolutional Autoencoder

Abstract

Accurate diagnosis of breast cancer in histopathology images is challenging due to the heterogeneity of cancer cell growth as well as of a variety of benign breast tissue proliferative lesions. In this paper, we propose a practical and self-interpretable invasive cancer diagnosis solution. With minimum annotation information, the proposed method mines contrast patterns between normal and malignant images in unsupervised manner and generates a probability map of abnormalities to verify its reasoning. Particularly, a fully convolutional autoencoder is used to learn the dominant structural patterns among normal image patches. Patches that do not share the characteristics of this normal population are detected and analyzed by one-class support vector machine and 1-layer neural network. We apply the proposed method to a public breast cancer image set. Our results, in consultation with a senior pathologist, demonstrate that the proposed method outperforms existing methods. The obtained probability map could benefit the pathology practice by providing visualized verification data and potentially leads to a better understanding of data-driven diagnosis solutions.

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Keywords

FOS: Computer and information sciences, Computer Science - Machine Learning, Breast cancer diagnosis, abnormality detection,, Computer Vision and Pattern Recognition (cs.CV), Image and Video Processing (eess.IV), abnormality detection, Computer Science - Computer Vision and Pattern Recognition, discriminative pattern learning, Electrical Engineering and Systems Science - Image and Video Processing, Quantitative Biology - Quantitative Methods, convolutional autoencoder, TK1-9971, Machine Learning (cs.LG), histopathology image analysis, FOS: Biological sciences, FOS: Electrical engineering, electronic engineering, information engineering, Electrical engineering. Electronics. Nuclear engineering, Quantitative Methods (q-bio.QM), discriminativepattern learning

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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