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Coordinated protein modules define DNA damage responses to carboplatin at single cell resolution in human ovarian carcinoma models

Authors: Jacob S. Bedia; Ying-Wen Huang; Antonio Delgado Gonzalez; Veronica D. Gonzalez; Ionut-Gabriel Funingana; Zainab Rahil; Alyssa Mike; +5 Authors

Coordinated protein modules define DNA damage responses to carboplatin at single cell resolution in human ovarian carcinoma models

Abstract

AbstractTubo-ovarian high-grade serous carcinoma (HGSC) is the most lethal gynecological malignancy and frequently responds to platinum-based chemotherapy because of common genetic and somatic impairment of DNA damage repair (DDR) pathways. The mechanisms of clinical platinum resistance are diverse and poorly molecularly defined. Consequently, there are no biomarkers or medicines that improve patient outcomes. Herein we use single cell mass cytometry (CyTOF) to systematically evaluate the phosphorylation and abundance of proteins known to participate in the DNA damage response (DDR). Single cell analyses of highly characterized HGSC cell lines that phenocopy human patients show that cells with comparable levels of intranuclear platinum, a proxy for carboplatin uptake, undergo different cell fates. Unsupervised analyses revealed a continuum of DDR responses. Decompositional methods were used to identify eight distinct protein modules of carboplatin resistance and sensitivity at single cell resolution. CyTOF profiling of primary and secondary platinum-resistance patient models shows that a complex DDR sensitivity module is strongly associated with response, suggesting it as a potential tool to clinically characterize complex drug resistance phenotypes.

Keywords

Ovarian Neoplasms, Proteomics, Uniform ManifoldApproximation and Projection/UMAP, DNA Repair, UWB1.289, carboplatin resistance, tubo-ovarian high grade carcinoma, Antineoplastic Agents, DNA damage response, Article, Carboplatin, non-negative matrix factorization, single cells, Drug Resistance, Neoplasm, Cell Line, Tumor, Humans, Female, CIOV1, Single-Cell Analysis, Phosphorylation, CIOV2, partition-based graph abstraction, CIOV3, mass cytometry/CyTOF, DNA Damage

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
Green
gold