Toil enables reproducible, open source, big biomedical data analyses
Copyright policy )Toil enables reproducible, open source, big biomedical data analyses
Toil is portable, open-source workflow software that supports contemporary workflow definition languages and can be used to securely and reproducibly run scientific workflows efficiently at large-scale. To demonstrate Toil, we processed over 20,000 RNA-seq samples to create a consistent meta-analysis of five datasets free of computational batch effects that we make freely available. Nearly all the samples were analysed in under four days using a commercial cloud cluster of 32,000 preemptable cores.
- University of California, Santa Cruz United States
- University of California, Berkeley United States
- Massachusetts Institute of Technology United States
- University of California United States
Humans (mesh), Electronic Data Processing, Biomedical Research (mesh), Biomedical Research, Humans, Software (mesh), Software, Electronic Data Processing (mesh)
Humans (mesh), Electronic Data Processing, Biomedical Research (mesh), Biomedical Research, Humans, Software (mesh), Software, Electronic Data Processing (mesh)
selected citations These citations are derived from selected sources.This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).1K popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 0.01% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Top 0.1% impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 0.1%
Citations provided by BIP!Popularity provided by BIP!