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Fast Compressed Self-indexes with Deterministic Linear-Time Construction

Fast compressed self-indexes with deterministic linear-time construction
Authors: J. Ian Munro; Gonzalo Navarro 0001; Yakov Nekrich;

Fast Compressed Self-indexes with Deterministic Linear-Time Construction

Abstract

We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $��$, can be built in $O(n)$ deterministic time, within $O(n\log��)$ bits of working space, and counts the number of occurrences of any pattern $P$ in $T$ in time $O(|P| + \log\log_w ��)$ on a RAM machine of $w=��(\log n)$-bit words. This new index outperforms all the other compressed indexes that can be built in linear deterministic time, and some others. The only faster indexes can be built in linear time only in expectation, or require $��(n\log n)$ bits. We also show that, by using $O(n\log��)$ bits, we can build in linear time an index that counts in time $O(|P|/\log_��n + \log n(\log\log n)^2)$, which is RAM-optimal for $w=��(\log n)$ and sufficiently long patterns.

Countries
Germany, Chile
Keywords

FOS: Computer and information sciences, Data structures, deterministic construction, Analysis of algorithms and problem complexity, Self-indexes, Succinct data structures, self-indexes, 004, Suffix arrays, succinct data structures, suffix arrays, Computer Science - Data Structures and Algorithms, Deterministic construction, Data Structures and Algorithms (cs.DS), ddc: ddc:004

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
Green
hybrid