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Nature Genetics
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Nature Genetics
Article . 2008 . Peer-reviewed
License: Springer TDM
Data sources: Crossref
Nature Genetics
Article . 2008
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Combinatorial patterns of histone acetylations and methylations in the human genome

Authors: Wang, ZB; Zang, CZ; Rosenfeld, JA; Schones, DE; Barski, A; Cuddapah, S; Cui, KR; +4 Authors

Combinatorial patterns of histone acetylations and methylations in the human genome

Abstract

Histones are characterized by numerous posttranslational modifications that influence gene transcription. However, because of the lack of global distribution data in higher eukaryotic systems, the extent to which gene-specific combinatorial patterns of histone modifications exist remains to be determined. Here, we report the patterns derived from the analysis of 39 histone modifications in human CD4(+) T cells. Our data indicate that a large number of patterns are associated with promoters and enhancers. In particular, we identify a common modification module consisting of 17 modifications detected at 3,286 promoters. These modifications tend to colocalize in the genome and correlate with each other at an individual nucleosome level. Genes associated with this module tend to have higher expression, and addition of more modifications to this module is associated with further increased expression. Our data suggest that these histone modifications may act cooperatively to prepare chromatin for transcriptional activation.

Country
Korea (Republic of)
Keywords

COMPLEX, Genome, Human, CODE, LANGUAGE, Chromosome Mapping, Acetylation, Histone-Lysine N-Methyltransferase, Methylation, Histones, ENHANCERS, Enhancer Elements, Genetic, T-CELLS, Histone Methyltransferases, Cluster Analysis, Humans, TRANSCRIPTION, Protein Methyltransferases, CHROMATIN DOMAINS, Promoter Regions, Genetic, Cells, Cultured, GENE-EXPRESSION, Histone Acetyltransferases, Protein Binding

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2K
Top 0.1%
Top 0.1%
Top 0.01%
bronze