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nextgenusfs/funannotate: funannotate v1.4.2

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 12 Jul 2018Publisher:Zenodo
Authors: Love, Jon; Palmer, Jon; Stajich, Jason; Esser, Tyler; Kastman, Erik; Winter, David;

doi: 10.5281/zenodo.1312883 , 10.5281/zenodo.2576527 , 10.5281/zenodo.1342272 , 10.5281/zenodo.1471785 , 10.5281/zenodo.1311059

nextgenusfs/funannotate: funannotate v1.4.2

Abstract

fix bug in train and update where script would die due to symlink error #189 for predict the --protein_alignments option now takes GFF3 input (not exonerate output). This is to make consistent with the --transcript_alignments. Scripts now write hints file for augustus from the GFF3 file. similar to above, added funannotate util prot2genome which will run the diamond/exonerate mapping of proteins to the genome --> output is GFF3 file compatible with EVM. These data can then be passed to --protein_alignments

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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