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ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2019
License: CC BY
Data sources: Datacite
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Time-resolved single-cell RNA-seq using scSLAM-seq and GRAND-SLAM

Authors: Erhard, Florian; Jürges, Christopher;

Time-resolved single-cell RNA-seq using scSLAM-seq and GRAND-SLAM

Abstract

This is the example data for the protocol "Time-resolved single-cell RNA-seq using scSLAM-seq and GRAND-SLAM". The test data comprises sequencing data from 12 different cells. Five of them in mock condition with 4sU, five infected with MCMV with 4sU and 2 uninfected cells without 4sU. For each sample, paired-end sequencing was conducted and therefore two files exist for each sample. The files can be found at data/fastq. The reads should be mapped against the mouse genome and the MCMV genome, which are located in data/genome. The sequence is in fasta-fomat and the features in gtf-format.The scripts conducting quality control, read mapping and GRAND-SLAM analysis can be found in the processing folder. For each computational step in this protocol there is a shell script for running the necessary steps. Executing all scripts will reproduce the analysis of our test data

Keywords

scSLAM-seq, GRAND-SLAM

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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