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CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation

Authors: Christopher J. Arthurs; Rostislav Khlebnikov; Alex Melville; Marija Marcan; Alberto Gómez 0002; Desmond Dillon-Murphy; Federica Cuomo; +27 Authors

CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation

Abstract

In this work, we describe the CRIMSON (CardiovasculaR Integrated Modelling and SimulatiON) software environment. CRIMSON provides a powerful, customizable and user-friendly system for performing three-dimensional and reduced-order computational haemodynamics studies via a pipeline which involves: 1) segmenting vascular structures from medical images; 2) constructing analytic arterial and venous geometric models; 3) performing finite element mesh generation; 4) designing, and 5) applying boundary conditions; 6) running incompressible Navier-Stokes simulations of blood flow with fluid-structure interaction capabilities; and 7) post-processing and visualizing the results, including velocity, pressure and wall shear stress fields. A key aim of CRIMSON is to create a software environment that makes powerful computational haemodynamics tools accessible to a wide audience, including clinicians and students, both within our research laboratories and throughout the community. The overall philosophy is to leverage best-in-class open source standards for medical image processing, parallel flow computation, geometric solid modelling, data assimilation, and mesh generation. It is actively used by researchers in Europe, North and South America, Asia, and Australia. It has been applied to numerous clinical problems; we illustrate applications of CRIMSON to real-world problems using examples ranging from pre-operative surgical planning to medical device design optimization.

Countries
Australia, United Kingdom, United States
Keywords

Models, Anatomic, Patient-Specific Modeling, QH301-705.5, Finite Element Analysis, 610, Cardiovascular, Imaging, User-Computer Interface, Imaging, Three-Dimensional, Postoperative Complications, Models, Humans, Computer Simulation, Biology (General), Anatomic, Hemodynamics, Models, Cardiovascular, Computational Biology, 600, Magnetic Resonance Imaging, Liver Transplantation, Alagille Syndrome, Heart Disease Risk Factors, Three-Dimensional, Blood Vessels, Software, Research Article

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    selected citations
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    popularity
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    Top 1%
    influence
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    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
67
Top 1%
Top 10%
Top 1%
Green
gold