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Genes & Development
Article . 2007 . Peer-reviewed
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The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron

Authors: John F, Etchberger; Adam, Lorch; Monica C, Sleumer; Richard, Zapf; Steven J, Jones; Marco A, Marra; Robert A, Holt; +2 Authors

The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron

Abstract

Taste receptor cells constitute a highly specialized cell type that perceives and conveys specific sensory information to the brain. The detailed molecular composition of these cells and the mechanisms that program their fate are, in general, poorly understood. We have generated serial analysis of gene expression (SAGE) libraries from two distinct populations of single, isolated sensory neuron classes, the gustatory neuron class ASE and the thermosensory neuron class AFD, from the nematode Caenorhabditis elegans. By comparing these two libraries, we have identified >1000 genes that define the ASE gustatory neuron class on a molecular level. This set of genes contains determinants of the differentiated state of the ASE neuron, such as a surprisingly complex repertoire of transcription factors (TFs), ion channels, neurotransmitters, and receptors, as well as seven-transmembrane receptor (7TMR)-type putative gustatory receptor genes. Through the in vivo dissection of the cis-regulatory regions of several ASE-expressed genes, we identified a small cis-regulatory motif, the “ASE motif,” that is required for the expression of many ASE-expressed genes. We demonstrate that the ASE motif is a binding site for the C2H2 zinc finger TF CHE-1, which is essential for the correct differentiation of the ASE gustatory neuron. Taken together, our results provide a unique view of the molecular landscape of a single neuron type and reveal an important aspect of the regulatory logic for gustatory neuron specification in C. elegans.

Keywords

Embryonic Induction, Binding Sites, Embryo, Nonmammalian, Base Sequence, Gene Expression Profiling, Molecular Sequence Data, Gene Expression Regulation, Developmental, Taste Buds, Models, Biological, Animals, Genetically Modified, Consensus Sequence, Animals, Neurons, Afferent, RNA, Messenger, Regulatory Elements, Transcriptional, Caenorhabditis elegans, Caenorhabditis elegans Proteins, Gene Library, Protein Binding, Transcription Factors

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
159
Top 10%
Top 10%
Top 1%
Published in a Diamond OA journal