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Proceedings of the National Academy of Sciences
Article . 1999 . Peer-reviewed
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RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

Authors: Philippe Giegé; Axel Brennicke;

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

Abstract

On the basis of the sequence of the mitochondrial genome in the flowering plant Arabidopsis thaliana, RNA editing events were systematically investigated in the respective RNA population. A total of 456 C to U, but no U to C, conversions were identified exclusively in mRNAs, 441 in ORFs, 8 in introns, and 7 in leader and trailer sequences. No RNA editing was seen in any of the rRNAs or in several tRNAs investigated for potential mismatch corrections. RNA editing affects individual coding regions with frequencies varying between 0 and 18.9% of the codons. The predominance of RNA editing events in the first two codon positions is not related to translational decoding, because it is not correlated with codon usage. As a general effect, RNA editing increases the hydrophobicity of the coded mitochondrial proteins. Concerning the selection of RNA editing sites, little significant nucleotide preference is observed in their vicinity in comparison to unedited C residues. This sequence bias is, per se , not sufficient to specify individual C nucleotides in the total RNA population in Arabidopsis mitochondria.

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Keywords

Base Sequence, Molecular Sequence Data, Arabidopsis, Introns, Mitochondria, Open Reading Frames, RNA, Transfer, Genetic Code, RNA, Plant, RNA, Ribosomal, Protein Biosynthesis, Deoxycytosine Nucleotides, Nucleic Acid Conformation, RNA Editing, RNA, Messenger, Deoxyuracil Nucleotides

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    370
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
370
Top 1%
Top 1%
Top 1%
bronze