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Project-MONAI/MONAI: 0.6.0

Authors: Nic Ma; Wenqi Li; Richard Brown; Yiheng Wang; Benjamin Gorman; Behrooz; Hans Johnson; +22 Authors

Project-MONAI/MONAI: 0.6.0

Abstract

Added Overview document for feature highlights in v0.6 10 new transforms, a masked loss wrapper, and a NetAdapter for transfer learning APIs to load networks and pre-trained weights from Clara Train Medical Model ARchives (MMARs) Base metric and cumulative metric APIs, 4 new regression metrics Initial CSV dataset support Decollating mini-batch as the default first postprocessing step Initial backward compatibility support via monai.utils.deprecated Attention-based vision modules and UNETR for segmentation Generic module loaders and Gaussian mixture models using the PyTorch JIT compilation Inverse of image patch sampling transforms Network block utilities get_[norm, act, dropout, pool]_layer unpack_items mode for apply_transform and Compose New event INNER_ITERATION_STARTED in the deepgrow interactive workflow set_data API for cache-based datasets to dynamically update the dataset content Fully compatible with PyTorch 1.9 --disttests and --min options for runtests.sh Initial support of pre-merge tests with Nvidia Blossom system ### Changed Base Docker image upgraded to nvcr.io/nvidia/pytorch:21.06-py3 from nvcr.io/nvidia/pytorch:21.04-py3 Optionally depend on PyTorch-Ignite v0.4.5 instead of v0.4.4 Unified the demo, tutorial, testing data to the project shared drive, and Project-MONAI/MONAI-extra-test-data Unified the terms: post_transform is renamed to postprocessing, pre_transform is renamed to preprocessing Unified the postprocessing transforms and event handlers to accept the "channel-first" data format evenly_divisible_all_gather and string_list_all_gather moved to monai.utils.dist ### Removed Support of 'batched' input for postprocessing transforms and event handlers TorchVisionFullyConvModel set_visible_devices utility function SegmentationSaver and TransformsInverter handlers ### Fixed Issue of handling big-endian image headers Multi-thread issue for non-random transforms in the cache-based datasets Persistent dataset issue when multiple processes sharing a non-exist cache location Typing issue with Numpy 1.21.0 Loading checkpoint with both model and optmizier using CheckpointLoader when strict_shape=False SplitChannel has different behaviour depending on numpy/torch inputs Transform pickling issue caused by the Lambda functions Issue of filtering by name in generate_param_groups Inconsistencies in the return value types of class_activation_maps Various docstring typos Various usability enhancements in monai.transforms

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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