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Nucleic Acids Research
Article . 2003 . Peer-reviewed
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Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli

Authors: Claude, Sauter; Jérôme, Basquin; Dietrich, Suck;

Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli

Abstract

The Hfq protein was discovered in Escherichia coli in the early seventies as a host factor for the Qbeta phage RNA replication. During the last decade, it was shown to be involved in many RNA processing events and remote sequence homology indicated a link to spliceosomal Sm proteins. We report the crystal structure of the E.coli Hfq protein showing that its monomer displays a characteristic Sm-fold and forms a homo-hexamer, in agreement with former biochemical data. Overall, the structure of the E.coli Hfq ring is similar to the one recently described for Staphylococcus aureus. This confirms that bacteria contain a hexameric Sm-like protein which is likely to be an ancient and less specialized form characterized by a relaxed RNA binding specificity. In addition, we identified an Hfq ortholog in the archaeon Methanococcus jannaschii which lacks a classical Sm/Lsm gene. Finally, a detailed structural comparison shows that the Sm-fold is remarkably well conserved in bacteria, Archaea and Eukarya, and represents a universal and modular building unit for oligomeric RNA binding proteins.

Related Organizations
Keywords

Bacteria, Sequence Homology, Amino Acid, Protein Conformation, Escherichia coli Proteins, Molecular Sequence Data, Host Factor 1 Protein, Crystallography, X-Ray, Ribonucleoproteins, Small Nuclear, Autoantigens, Protein Structure, Secondary, snRNP Core Proteins, Evolution, Molecular, Amino Acid Sequence, Dimerization, Sequence Alignment

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    selected citations
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    190
    popularity
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    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
190
Top 10%
Top 10%
Top 10%
gold