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Virology
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Article . 2004
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Mapping the phosphoprotein binding site on Sendai virus NP protein assembled into nucleocapsids

Authors: Department of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, FL 32610, USA ( host institution ); Çevik, Bayram ( author ); Kaesberg, Jeffrey ( author ); Smallwood, Sherin ( author ); Feller, Joyce A ( author ); Moyer, Sue A ( author );

Mapping the phosphoprotein binding site on Sendai virus NP protein assembled into nucleocapsids

Abstract

To catalyze RNA synthesis, the Sendai virus P-L RNA polymerase complex first binds the viral nucleocapsid (NC) template through an interaction of the P subunit with NP assembled with the genome RNA. For replication, the polymerase utilizes an NP(0)-P complex as the substrate for the encapsidation of newly synthesized RNA which involves both NP-RNA and NP-NP interactions. Previous studies showed that the C-terminal 124 amino acids of NP (aa 401-524) contain the P-NC binding site. To further delineate the amino acids important for this interaction, C-terminal truncations and site-directed mutations in NP were characterized for their replication activity and protein-protein interactions. This C-terminal region was found in fact to be necessary for several different protein interactions. The C-terminal 492-524 aa were nonessential for the complete activity of the protein. Deletion of amino acids 472-491, however, abolished replication activity due to a specific defect in the formation of the NP(0)-P complex. Binding of the P protein of the polymerase complex to NC required aa 462-471 of NP, while self-assembly of NP into NC required aa 440-461. Site-directed mutations from aa 435 to 491 showed, however, that the charged amino acids in this region were not essential for these defects.

Country
United States
Related Organizations
Keywords

NP0–P, Binding Sites, Macromolecular Substances, Viral Core Proteins, Molecular Sequence Data, Nucleocapsid Proteins, Phosphoproteins, Virus Replication, Sendai virus, Cell Line, Nucleoproteins, NP 0–P, Virology, Mutagenesis, Site-Directed, Humans, RNA, Viral, Amino Acid Sequence, Nucleocapsid, Sequence Deletion

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
13
Average
Average
Average
Green
hybrid