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pymc-devs/pymc: v5.0.0

Authors: Wiecki, Thomas; Salvatier, John; Vieira, Ricardo; Kochurov, Maxim; Patil, Anand; Osthege, Michael; Willard, Brandon T.; +23 Authors

pymc-devs/pymc: v5.0.0

Abstract

What's Changed In this major release we are switching our graph computation backend from Aesara to PyTensor, which is a fork of Aesara under PyMC governance. Read the full announcement here: PyMC is Forking Aesara to PyTensor. The switch itself should be rather seamless and you can probably just update your imports: import aesara.tensor as at # old (pymc >=4,< 5) import pytensor.tensor as pt # new (pymc >=5) If you encounter problems updating please check the latest Discussions and don't hesitate to get in toch. Major Changes πŸ›  ⚠ Switched the graph backend from Aesara to PyTensor Merged AePPL into pm.logprob submodule Deprecated ordered transform by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6375 ⚠ The log_likelihood is no longer computed by default but can be added with idata = pm.compute_log_likelihood(idata) or using pm.sample(idata_kwargs=dict(log_likelihood=True)) by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6374 Refactored Minibatch and stopped using deprecated MRG sampler by @ferrine in https://github.com/pymc-devs/pymc/pull/6304 New Features & Bugfixes πŸŽ‰ Added alternative parametrization for AssymetricLaplace by @aloctavodia in https://github.com/pymc-devs/pymc/pull/6337 Allow transforms to work with multiple-valued nodes by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6341 Support logp derivation in DensityDist by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6361 Docs & Maintenance πŸ”§ Removed NoDistribution from docs by @stestoll in https://github.com/pymc-devs/pymc/pull/6316 Bring back logps by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6272 Add issue templates by @ferrine in https://github.com/pymc-devs/pymc/pull/6327 Fix ordering Transformation for batched dimensions by @TimOliverMaier in https://github.com/pymc-devs/pymc/pull/6255 Fix transforms example by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6333 Bugfixes to increase robustness against unnamed dims by @michaelosthege in https://github.com/pymc-devs/pymc/pull/6339 Updated GOVERNANCE.md by @canyon289 in https://github.com/pymc-devs/pymc/pull/6358 Fixed overriding user provided mp_ctx strings to pm.sample() on M1 MacOS by @digicosmos86 in https://github.com/pymc-devs/pymc/pull/6363 Simplify measurable transform rewrites by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6370 Fail docs build on errors in notebooks by @michaelosthege in https://github.com/pymc-devs/pymc/pull/6324 Fix measurable stack and join with interdependent inputs by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6342 Fix transformed Scan values by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/6343 Curated ecosystem references by @michaelosthege in https://github.com/pymc-devs/pymc/pull/6383 Switched run_mypy.py from pass-listing to fail-listing by @michaelosthege in https://github.com/pymc-devs/pymc/pull/6381 Runing pydocstyle in pre-commit by @michaelosthege in https://github.com/pymc-devs/pymc/pull/6382 New Contributors @digicosmos86 made their first contribution in https://github.com/pymc-devs/pymc/pull/6363 Full Changelog: https://github.com/pymc-devs/pymc/compare/v4.4.0...v5.0.0

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
16
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Top 10%
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