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Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes

الأساس الهيكلي للأجسام المضادة المعادلة لفيروس كورونا 2 المرتبط بمتلازمة الجهاز التنفسي الحادة الوخيمة مع حواتم ربط جديدة
Authors: Dan Fu; Guangshun Zhang; Yuhui Wang; Zheng Zhang; Hengrui Hu; Shū Shěn; Jun Wu; +30 Authors

Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes

Abstract

The ongoing Coronavirus Disease 2019 (COVID-19) pandemic caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) threatens global public health and economy unprecedentedly, requiring accelerating development of prophylactic and therapeutic interventions. Molecular understanding of neutralizing antibodies (NAbs) would greatly help advance the development of monoclonal antibody (mAb) therapy, as well as the design of next generation recombinant vaccines. Here, we applied H2L2 transgenic mice encoding the human immunoglobulin variable regions, together with a state-of-the-art antibody discovery platform to immunize and isolate NAbs. From a large panel of isolated antibodies, 25 antibodies showed potent neutralizing activities at sub-nanomolar levels by engaging the spike receptor-binding domain (RBD). Importantly, one human NAb, termed PR1077, from the H2L2 platform and 2 humanized NAb, including PR953 and PR961, were further characterized and subjected for subsequent structural analysis. High-resolution X-ray crystallography structures unveiled novel epitopes on the receptor-binding motif (RBM) for PR1077 and PR953, which directly compete with human angiotensin-converting enzyme 2 (hACE2) for binding, and a novel non-blocking epitope on the neighboring site near RBM for PR961. Moreover, we further tested the antiviral efficiency of PR1077 in the Ad5-hACE2 transduction mouse model of COVID-19. A single injection provided potent protection against SARS-CoV-2 infection in either prophylactic or treatment groups. Taken together, these results shed light on the development of mAb-related therapeutic interventions for COVID-19.

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Keywords

Radiology, Nuclear Medicine and Imaging, Infectious disease (medical specialty), FOS: Health sciences, Antibodies, Viral, Gene, Coronavirus Disease 2019, Computational biology, Epitopes, Mice, Pathology, Disease, Biology (General), Antibodies, Monoclonal, Angiotensin-converting enzyme 2, Infectious Diseases, Spike Glycoprotein, Coronavirus, Receptors, Virus, Medicine, Epitope, Research Article, Protein Binding, Receptor, Monoclonal antibody, Therapeutic Antibodies: Development, Engineering, and Applications, QH301-705.5, Epitope mapping, Immunology, Mice, Transgenic, Coronavirus Disease 2019 Research, Protein Domains, Neutralization Tests, Virology, Health Sciences, Genetics, Animals, Humans, Pandemics, Biology, Antibody, Corona Virus, Recombinant DNA, SARS-CoV-2, FOS: Clinical medicine, COVID-19, Neutralizing antibody, Antibodies, Neutralizing, Coronavirus, Coronavirus disease 2019 (COVID-19), FOS: Biological sciences

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    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
34
Top 10%
Top 10%
Top 1%
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