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Exome Capture Reveals ZNF423 and CEP164 Mutations, Linking Renal Ciliopathies to DNA Damage Response Signaling

Authors: Thomas Benzing; Andrew Cluckey; JoAnn Sekiguchi; Ronald Roepman; Max C. Liebau; Chen Jei Hong; Ranjani Sri Ganji; +68 Authors

Exome Capture Reveals ZNF423 and CEP164 Mutations, Linking Renal Ciliopathies to DNA Damage Response Signaling

Abstract

Nephronophthisis-related ciliopathies (NPHP-RC) are degenerative recessive diseases that affect kidney, retina, and brain. Genetic defects in NPHP gene products that localize to cilia and centrosomes defined them as "ciliopathies." However, disease mechanisms remain poorly understood. Here, we identify by whole-exome resequencing, mutations of MRE11, ZNF423, and CEP164 as causing NPHP-RC. All three genes function within the DNA damage response (DDR) pathway. We demonstrate that, upon induced DNA damage, the NPHP-RC proteins ZNF423, CEP164, and NPHP10 colocalize to nuclear foci positive for TIP60, known to activate ATM at sites of DNA damage. We show that knockdown of CEP164 or ZNF423 causes sensitivity to DNA damaging agents and that cep164 knockdown in zebrafish results in dysregulated DDR and an NPHP-RC phenotype. Our findings link degenerative diseases of the kidney and retina, disorders of increasing prevalence, to mechanisms of DDR.

Countries
Netherlands, Korea (Republic of), United Kingdom, United Kingdom, Netherlands, Germany, Denmark
Keywords

570, DNA-Binding Proteins/metabolism*, Cystic/genetics*, 610, Genes, Recessive, DCN PAC - Perception action and control, NCMLS 6: Genetics and epigenetic pathways of disease, /dk/atira/pure/subjectarea/asjc/1300, Cystic, Mice, Cilia/metabolism, Zebrafish/metabolism, Recessive, Animals, Humans, Exome, Cilia, DNA Damage*, Zebrafish, MRE11 Homologue Protein, Biochemistry, Genetics and Molecular Biology(all), NCMLS 6: Genetics and epigenetic pathways of disease IGMD 9: Renal disorder, Proteins, Kidney Diseases, Cystic, DNA-Binding Proteins, Genes, Gene Knockdown Techniques, Microtubule Proteins, Zebrafish/embryology, Kidney Diseases, Microtubule Proteins/metabolism*, Exome*, DNA Damage, Signal Transduction

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    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    351
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 0.1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
351
Top 1%
Top 1%
Top 0.1%
Green
hybrid