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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Article . 2012 . Peer-reviewed
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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
PROTEOMICS
Article . 2012
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Identifying true protein complex constituents in interaction proteomics: The example of the DMXL2 protein complex

Authors: August B. Smit; Ka Wan Li; Frank Koopmans; Patricia Klemmer; Ning Chen; Ramesh Karupothula;

Identifying true protein complex constituents in interaction proteomics: The example of the DMXL2 protein complex

Abstract

A typical high‐sensitivity antibody affinity purification‐mass spectrometry experiment easily identifies hundreds of protein interactors. However, most of these are non‐valid resulting from multiple causes other than interaction with the bait protein. To discriminate true interactors from off‐target recognition, we propose to differentially include an (peptide) antigen during the antibody incubation in the immuno‐precipitation experiment. This contrasts the specific antibody–bait protein interactions, versus all other off‐target protein interactions. To exemplify the power of the approach, we studied the DMXL2 interactome. From the initial six immuno‐precipitations, we identified about 600 proteins. When filtering for interactors present in all anti‐DMXL2 antibody immuno‐precipitation experiments, absent in the bead controls, and competed off by the peptide antigen, this hit list is reduced to ten proteins, including known and novel interactors of DMXL2. Together, our approach enables the use of a wide range of available antibodies in large‐scale protein interaction proteomics, while gaining specificity of the interactions.

Country
Netherlands
Related Organizations
Keywords

Proteomics, Vacuolar Proton-Translocating ATPases, SDG 16 - Peace, Nerve Tissue Proteins, Justice and Strong Institutions, Mice, Inbred C57BL, Mice, Multiprotein Complexes, Protein Interaction Mapping, Animals, Humans, Antigens, Peptides, Protein Binding

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    citations
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    31
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
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    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
31
Top 10%
Top 10%
Top 10%
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