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Computational Science & Discovery
Article . 2015 . Peer-reviewed
License: IOP Copyright Policies
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ObsPy: a bridge for seismology into the scientific Python ecosystem

Authors: Krischer, Lion; Megies, Tobias; Barsch, Robert; Beyreuther, Moritz; Lecocq, Thomas TL; Caudron, Corentin; Wassermann, Joachim;

ObsPy: a bridge for seismology into the scientific Python ecosystem

Abstract

The Python libraries NumPy and SciPy are extremely powerful tools for numerical processing and analysis well suited to a large variety of applications. We developed ObsPy (http://obspy.org), a Python library for seismology intended to facilitate the development of seismological software packages and workflows, to utilize these abilities and provide a bridge for seismology into the larger scientific Python ecosystem. Scientists in many domains who wish to convert their existing tools and applications to take advantage of a platform like the one Python provides are confronted with several hurdles such as special file formats, unknown terminology, and no suitable replacement for a non-trivial piece of software. We present an approach to implement a domain-specific time series library on top of the scientific NumPy stack. In so doing, we show a realization of an abstract internal representation of time series data permitting I/O support for a diverse collection of file formats. Then we detail the integration and repurposing of well established legacy codes, enabling them to be used in modern workflows composed in Python. Finally we present a case study on how to integrate research code into ObsPy, opening it to the broader community. While the implementations presented in this work are specific to seismology, many of the described concepts and abstractions are directly applicable to other sciences, especially to those with an emphasis on time series analysis.

Country
Belgium
Keywords

Sciences exactes et naturelles

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    630
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 0.1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 1%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
630
Top 0.1%
Top 1%
Top 1%
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