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The Quantitative Methods for Psychology
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Bayesian linear mixed models using Stan: A tutorial for psychologists, linguists, and cognitive scientists

Authors: Sorensen, Tanner; Hohenstein, Sven; Vasishth, Shravan (Prof. Dr.);

Bayesian linear mixed models using Stan: A tutorial for psychologists, linguists, and cognitive scientists

Abstract

With the arrival of the R packages nlme and lme4, linear mixed models (LMMs) have come to be widely used in experimentally-driven areas like psychology, linguistics, and cognitive science. This tutorial provides a practical introduction to fitting LMMs in a Bayesian framework using the probabilistic programming language Stan. We choose Stan (rather than WinBUGS or JAGS) because it provides an elegant and scalable framework for fitting models in most of the standard applications of LMMs. We ease the reader into fitting increasingly complex LMMs, first using a two-condition repeated measures self-paced reading study, followed by a more complex $2\times 2$ repeated measures factorial design that can be generalized to much more complex designs.

Submitted to Psychological Methods (Special Issue on Bayesian Data Analysis); 30 pages; 6 figures

Keywords

Methodology (stat.ME), FOS: Computer and information sciences, Stan, R, Psychology, Bayesian data analysis, Statistics - Methodology, linear mixed models, BF1-990

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
126
Top 1%
Top 10%
Top 1%
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gold