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Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

descriptionPublicationkeyboard_double_arrow_right Article 01 Apr 2019 United States Publisher:International Union of Crystallography (IUCr)Journal:Acta Crystallographica Section D Structural Biology, volume 75, pages 451-454 (issn: 2059-7983,

Authors: Lora Mak; Gérard Bricogne; Jasmine Young; Sameer Velankar; Billy K. Poon; John L. Markley; Garib N. Murshudov; +30 Authors

doi: 10.1107/s2059798319004522

pmid: 30988261

pmc: PMC6465986

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

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Abstract

This letter announces that PDBx/mmCIF format files will become mandatory for crystallographic depositions to the Protein Data Bank (PDB).

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United States

Related Organizations

University of California, San Diego
United States
UNIVERSITY OF CAMBRIDGE
Rutgers, The State University of New Jersey
United States
Lawrence Berkeley National Laboratory
United States
Newcastle University
United Kingdom

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Keywords

570, PDB, PDBx, Protein Conformation, Biophysics, Crystallography, X-Ray, Databases, OneDep, macromolecular crystallography, Protein Data Bank, Humans, Databases, Protein, Worldwide Protein Data Bank, validation, PDBx/mmCIF format, Crystallography, Protein, biocuration, Proteins, Biological Sciences, mmCIF format, data archiving, Physical Sciences, Chemical Sciences, X-Ray, mmCIF, wwPDB, Database Management Systems, Biochemistry and Cell Biology, data dictionary, data standards, Software

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12 Research products, page 1 of 2

The New wwPDB Deposition and Annotation System
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Unified access to up-to-date residue-level annotations from UniProt and other biological databases for PDB data via PDBx/mmCIF files
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openmm/openmm: OpenMM 7.4.2
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ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models
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PDBx/mmCIF Ecosystem : Foundational Semantic Tools for Structural Biology
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3DEM
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PDBx/mmCIF: the foundation for the wwPDB OneDep system
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PDBeCIF: an open-source mmCIF/CIF parsing and processing package
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Archiving and disseminating integrative structure models
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Comment onOn the propagation of errorsby Jaskolski (2013)
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