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REST–Mediated Recruitment of Polycomb Repressor Complexes in Mammalian Cells

Authors: Dietrich, Nikolaj; Lerdrup, Mads; Landt, Eskild; Agrawal-Singh, Shuchi; Bak, Mads; Tommerup, Niels; Rappsilber, Juri; +2 Authors

REST–Mediated Recruitment of Polycomb Repressor Complexes in Mammalian Cells

Abstract

Polycomb Repressive Complex (PRC) 1 and PRC2 regulate genes involved in differentiation and development. However, the mechanism for how PRC1 and PRC2 are recruited to genes in mammalian cells is unclear. Here we present evidence for an interaction between the transcription factor REST, PRC1, and PRC2 and show that RNF2 and REST co-regulate a number of neuronal genes in human teratocarcinoma cells (NT2-D1). Using NT2-D1 cells as a model of neuronal differentiation, we furthermore showed that retinoic-acid stimulation led to displacement of PRC1 at REST binding sites, reduced H3K27Me3, and increased gene expression. Genome-wide analysis of Polycomb binding in Rest⁻/⁻ and Eed⁻/⁻ mouse embryonic stem (mES) cells showed that Rest was required for PRC1 recruitment to a subset of Polycomb regulated neuronal genes. Furthermore, we found that PRC1 can be recruited to Rest binding sites independently of CpG islands and the H3K27Me3 mark. Surprisingly, PRC2 was frequently increased around Rest binding sites located in CpG-rich regions in the Rest⁻/⁻ mES cells, indicating a more complex interplay where Rest also can limit PRC2 recruitment. Therefore, we propose that Rest has context-dependent functions for PRC1- and PRC2- recruitment, which allows this transcription factor to act both as a recruiter of Polycomb as well as a limiting factor for PRC2 recruitment at CpG islands.

Countries
Denmark, United Kingdom
Keywords

Cancer Research, Jumonji Domain-Containing Histone Demethylases, /dk/atira/pure/subjectarea/asjc/1300/1311, /dk/atira/pure/subjectarea/asjc/1300/1312, Polycomb-Group Proteins, Tretinoin, QH426-470, Mice, Genetics, Animals, Humans, Genetics(clinical), Molecular Biology, Ecology, Evolution, Behavior and Systematics, Embryonic Stem Cells, Neurons, Binding Sites, Teratoma, Gene Expression Regulation, Developmental, /dk/atira/pure/subjectarea/asjc/2700/2716, Cell Differentiation, Repressor Proteins, HEK293 Cells, CpG Islands, /dk/atira/pure/subjectarea/asjc/1300/1306, /dk/atira/pure/subjectarea/asjc/1100/1105, Research Article, Protein Binding

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    155
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
155
Top 1%
Top 10%
Top 1%
Green
gold
Related to Research communities
Cancer Research