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Biochimica et Biophysica Acta (BBA) - Bioenergetics
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Biochimica et Biophysica Acta (BBA) - Bioenergetics
Article . 2012
License: Elsevier Non-Commercial
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Biochimica et Biophysica Acta (BBA) - Bioenergetics
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The mechanism for proton pumping in cytochrome c oxidase from an electrostatic and quantum chemical perspective

Authors: Blomberg, Margareta R.A.; Siegbahn, Per E.M.;

The mechanism for proton pumping in cytochrome c oxidase from an electrostatic and quantum chemical perspective

Abstract

The mechanism for proton pumping in cytochrome c oxidase in the respiratory chain, has for decades been one of the main unsolved problems in biochemistry. However, even though several different suggested mechanisms exist, many of the steps in these mechanisms are quite similar and constitute a general consensus framework for discussing proton pumping. When these steps are analyzed, at least three critical gating situations are found, and these points are where the suggested mechanisms in general differ. The requirements for gating are reviewed and analyzed in detail, and a mechanism is suggested, where solutions for all the gating situations are formulated. This mechanism is based on an electrostatic analysis of a kinetic experiment fior the O to E transition. The key component of the mechanism is a positively charged transition state. An electron on heme a opens the gate for proton transfer from the N-side to a pump loading site (PLS). When the negative charge of the electron is compensated by a chemical proton, the positive transition state prevents backflow from the PLS to the N-side at the most critical stage of the pumping process. The mechanism has now been tested by large model DFT calculations, and these calculations give strong support for the suggested mechanism.

Keywords

Static Electricity, Biophysics, Biological Transport, Cell Biology, Heme, DFT, Biochemistry, Electron Transport, Electron Transport Complex IV, Kinetics, Proton pumping, Animals, Humans, Quantum Theory, Protons, Gating, Quantum chemistry, Cytochrome c oxidase

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
58
Top 10%
Top 10%
Top 10%
hybrid