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Clinical Microbiology and Infection
Article . 2021 . Peer-reviewed
License: Elsevier Non-Commercial
Data sources: Crossref
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The global outbreak of Mycobacterium chimaera infections in cardiac surgery—a systematic review of whole-genome sequencing studies and joint analysis

Authors: Schreiber, Peter W; Kohl, Thomas A; Kuster, Stefan P; Niemann, Stefan; Sax, Hugo;

The global outbreak of Mycobacterium chimaera infections in cardiac surgery—a systematic review of whole-genome sequencing studies and joint analysis

Abstract

With the increasing dimensions of the international cardiac surgery-associated Mycobacterium chimaera outbreak the hypothesis of a point source arose.To review the published evidence of clonality among cardiac surgery-associated M. chimaera isolates evaluated by whole-genome sequencing (WGS) and to perform an integrative genomic analysis of available genome data.We searched PubMed and EMBASE for studies applying WGS on cardiac surgery-associated M. chimaera isolates.We included studies that applied WGS on more than a single M. chimaera isolate.Two authors independently extracted data from included studies. Available genome data from published studies were subjected to a joint analysis.Of 121 identified articles, nine studies were included. M. chimaera isolates from LivaNova heater-cooler devices (HCDs) had a high level of genetic similarity, but were genetically distant from isolates from HCDs produced by other manufacturers. With the exception of a single (11.1%) study, the remaining eight (89.9%) studies reported a high level of genetic proximity between the majority of M. chimaera isolates derived from cardiac surgery-associated patients and LivaNova HCDs. In-depth analysis revealed involvement of three distinct M. chimaera subgroups in the outbreak (1.1, 1.8, 2.1), with 1.1 suggested as causative of the outbreak. Samples taken at the LivaNova production site supported contamination with strains of subgroups 1.1 and 1.8. In the combined analysis of 526 publicly available WGS data sets, nearly all isolates from cardiac surgery-associated patients contained strain 1.1 (50/52, 96.2%), and at least one of the outbreak strains was found in almost all LivaNova HCDs (241/257, 93.8%), with strain 1.1 in particular present in 198/257 (77.0%).HCD contamination during production seems plausible as the predominant point source for the global M. chimaera outbreak. Although HCDs can be contaminated with mixed populations, M. chimaera strains of the subgroup 1.1 caused most infections.

Keywords

Mycobacterium Infections, 610 Medicine & health, 2725 Infectious Diseases, 2726 Microbiology (medical), Disease Outbreaks, Mycobacterium, 10234 Clinic for Infectious Diseases, Equipment Contamination, Humans, Cardiac Surgical Procedures

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
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    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 10%
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
20
Top 10%
Top 10%
Top 10%
bronze