Additional file 2: Table S8. Reliability obtained using whole-genome sequence data, with or without annotation, compared to that obtained using a medium marker density panel. Table S9. Reliability of different methods when using different marker panels selected on the basis of functional information or with an LD pruning strategy. Table S10. Reliability obtained using marker panels selected on the basis of functional information and for models with or without the incorporation of functional annotation. Table S11. Heritability estimated with different models when using different marker panels. Table S12. Bias of different models using different marker panels, measured as the coefficient of regression of trait deviations on genomic predictions.