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Developmental Biology
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Developmental Biology
Article . 2012
License: Elsevier Non-Commercial
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Developmental Biology
Article . 2012 . Peer-reviewed
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Functional genomics identifies neural stem cell sub-type expression profiles and genes regulating neuroblast homeostasis

Authors: Michael R. Miller; Jessica A. Osterhout; Travis D. Carney; Chris Q. Doe; Omer Ali Bayraktar; Kristin J. Robinson;

Functional genomics identifies neural stem cell sub-type expression profiles and genes regulating neuroblast homeostasis

Abstract

The Drosophila larval central brain contains about 10,000 differentiated neurons and 200 scattered neural progenitors (neuroblasts), which can be further subdivided into ~95 type I neuroblasts and eight type II neuroblasts per brain lobe. Only type II neuroblasts generate self-renewing intermediate neural progenitors (INPs), and consequently each contributes more neurons to the brain, including much of the central complex. We characterized six different mutant genotypes that lead to expansion of neuroblast numbers; some preferentially expand type II or type I neuroblasts. Transcriptional profiling of larval brains from these mutant genotypes versus wild-type allowed us to identify small clusters of transcripts enriched in type II or type I neuroblasts, and we validated these clusters by gene expression analysis. Unexpectedly, only a few genes were found to be differentially expressed between type I/II neuroblasts, suggesting that these genes play a large role in establishing the different cell types. We also identified a large group of genes predicted to be expressed in all neuroblasts but not in neurons. We performed a neuroblast-specific, RNAi-based functional screen and identified 84 genes that are required to maintain proper neuroblast numbers; all have conserved mammalian orthologs. These genes are excellent candidates for regulating neural progenitor self-renewal in Drosophila and mammals.

Keywords

Microscopy, Confocal, Genotype, Gene Expression Profiling, Brain, Gene Expression Regulation, Developmental, Cell Biology, Genomics, Neuroblast, Transit-amplifying, Microarray Analysis, Neural progenitors, Neural Stem Cells, Larva, Self-renewal, Animals, Cluster Analysis, Homeostasis, Drosophila, RNA Interference, Molecular Biology, Expression profiling, Developmental Biology

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    influence
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    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
36
Top 10%
Top 10%
Top 10%
hybrid