
Eukaryotic cells express several classes of small RNAs that regulate gene expression and ensure genome maintenance. Endogenous siRNAs (endo-siRNAs) and Piwi-interacting RNAs (piRNAs) mainly control gene and transposon expression in the germline, while microRNAs (miRNAs) generally function in post-transcriptional gene silencing in both somatic and germline cells. To provide an evolutionary and developmental perspective on small RNA pathways in nematodes, we identified and characterized known and novel small RNA classes through gametogenesis and embryo development in the parasitic nematodeAscaris suumand compared them with known small RNAs ofCaenorhabditis elegans. piRNAs, Piwi-clade Argonautes, and other proteins associated with the piRNA pathway have been lost inAscaris. miRNAs are synthesized immediately after fertilization in utero, before pronuclear fusion, and before the first cleavage of the zygote. This is the earliest expression of small RNAs ever described at a developmental stage long thought to be transcriptionally quiescent. A comparison of the two classes ofAscarisendo-siRNAs, 22G-RNAs and 26G-RNAs, to those inC. elegans, suggests great diversification and plasticity in the use of small RNA pathways during spermatogenesis in different nematodes. Our data reveal conserved characteristics of nematode small RNAs as well as features unique toAscaristhat illustrate significant flexibility in the use of small RNAs pathways, some of which are likely an adaptation toAscaris' life cycle and parasitism.
Base Sequence, Sequence Analysis, RNA, Zygote, Gene Expression Profiling, Ascaris, Inverted Repeat Sequences, Molecular Sequence Data, Embryonic Development, Gene Expression, Gene Expression Regulation, Developmental, Genetic Variation, High-Throughput Nucleotide Sequencing, Gametogenesis, Basic medicine, Animals, Cluster Analysis, RNA, Small Interfering, Spermatogenesis, Conserved Sequence
Base Sequence, Sequence Analysis, RNA, Zygote, Gene Expression Profiling, Ascaris, Inverted Repeat Sequences, Molecular Sequence Data, Embryonic Development, Gene Expression, Gene Expression Regulation, Developmental, Genetic Variation, High-Throughput Nucleotide Sequencing, Gametogenesis, Basic medicine, Animals, Cluster Analysis, RNA, Small Interfering, Spermatogenesis, Conserved Sequence
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