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Genome Research
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Data sources: UnpayWall
Genome Research
Article . 2011 . Peer-reviewed
Data sources: Crossref
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Deep small RNA sequencing from the nematodeAscarisreveals conservation, functional diversification, and novel developmental profiles

Authors: Wang, Jianbin; Czech, Benjamin; Crunk, Amanda; Wallace, Adam; Mitreva, Makedonka; Hannon, Gregory J.; Davis, Richard E.;

Deep small RNA sequencing from the nematodeAscarisreveals conservation, functional diversification, and novel developmental profiles

Abstract

Eukaryotic cells express several classes of small RNAs that regulate gene expression and ensure genome maintenance. Endogenous siRNAs (endo-siRNAs) and Piwi-interacting RNAs (piRNAs) mainly control gene and transposon expression in the germline, while microRNAs (miRNAs) generally function in post-transcriptional gene silencing in both somatic and germline cells. To provide an evolutionary and developmental perspective on small RNA pathways in nematodes, we identified and characterized known and novel small RNA classes through gametogenesis and embryo development in the parasitic nematodeAscaris suumand compared them with known small RNAs ofCaenorhabditis elegans. piRNAs, Piwi-clade Argonautes, and other proteins associated with the piRNA pathway have been lost inAscaris. miRNAs are synthesized immediately after fertilization in utero, before pronuclear fusion, and before the first cleavage of the zygote. This is the earliest expression of small RNAs ever described at a developmental stage long thought to be transcriptionally quiescent. A comparison of the two classes ofAscarisendo-siRNAs, 22G-RNAs and 26G-RNAs, to those inC. elegans, suggests great diversification and plasticity in the use of small RNA pathways during spermatogenesis in different nematodes. Our data reveal conserved characteristics of nematode small RNAs as well as features unique toAscaristhat illustrate significant flexibility in the use of small RNAs pathways, some of which are likely an adaptation toAscaris' life cycle and parasitism.

Countries
United States, Former Yugoslav Republic of Macedonia, United States
Keywords

Base Sequence, Sequence Analysis, RNA, Zygote, Gene Expression Profiling, Ascaris, Inverted Repeat Sequences, Molecular Sequence Data, Embryonic Development, Gene Expression, Gene Expression Regulation, Developmental, Genetic Variation, High-Throughput Nucleotide Sequencing, Gametogenesis, Basic medicine, Animals, Cluster Analysis, RNA, Small Interfering, Spermatogenesis, Conserved Sequence

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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
160
Top 10%
Top 10%
Top 1%
Green
bronze