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PFGD and SolGD architecture

Authors: Gajendran, Kamal; Gonzales, Michael D.; Farmer, Andrew; Archuleta, Eric; Win, Joe; Waugh, Mark E.; Sophien Kamoun;

PFGD and SolGD architecture

Abstract

Copyright information:Taken from "Phytophthora functional genomics database (PFGD): functional genomics of –plant interactions"Nucleic Acids Research 2005;34(Database issue):D465-D470.Published online 28 Dec 2005PMCID:PMC1347481.© The Author 2006. Published by Oxford University Press. All rights reserved Information flow starts with DNA sequences from or solanaceous plants (such as tomato and potato). DNA sequences are annotated either by transcript sequence pipeline or genomic sequence pipeline developed at NCGR. Annotation data for are deposited in the PFGD, and for tomato and potato, in the Solanaceae Genome Database (SolGD). Both databases have similar user interfaces accessed through the Internet via a web browser, starting with a sequence search on the Query Page. Users can then inspect annotated data by activating appropriate feature links associated with a sequence. PFGD contains a facility for users to enter functional analysis data of UniORF sequences that are used in their experiments, while SolGD is furnished with microarray data from –Solanaceae interactions. PFGD and SolGD are interlinked so that users can seamlessly browse the data between the two databases.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average