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Model . 2024
License: CC BY
Data sources: Datacite
ZENODO
Model . 2024
License: CC BY
Data sources: Datacite
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PanThera: Predictive analysis of Higher-Order Combination Therapies using Deep Neural Networks

Authors: A. Campana, Pedro; Prasse, Paul; Herwig, Ralf; Scheffer, Tobias;

PanThera: Predictive analysis of Higher-Order Combination Therapies using Deep Neural Networks

Abstract

This paper , accepted for publication in Briefings in Bioinformatics, develops a deep neural network that accepts cell descriptors and molecules of multiple administered drugs and predicts the joint dose-response hypersurface of the combinatorial treatment. Since the dose-response hypersurface over several concentration dimensions fully characterizes the interaction dynamics of the administered drugs, the model is a computational tool that guides the discovery of synergistic treatments. The neural network is a biochemistry-informed universal approximator; it can estimate any shape of a dose-response hypersurface and has desirable invariances built into its architecture. The model excels at interpolating and extrapolating dose-response surfaces; its predictions align well with known mechanisms of action. It is the first model that can estimate joint dose-response hypersurfaces of arbitrarily many drugs, including untried combinations, in the presence of arbitrary, potentially nonlinear interactions between drugs. We release the model itself as well as a database of likely synergistic drug triplets. Our code is available at https://github.com/alonsocampana/PanThera/; the database of likely synergistic drug triplets at https://zenodo.org/records/14001717.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average