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The Protein Interaction Landscape of the Human CMGC Kinase Group

Authors: Varjosalo, Markku; Keskitalo, Salla; Van Drogen, Audrey; Nurkkala, Helka; Vichalkovski, Anton; Aebersold, Ruedi; Gstaiger, Matthias;

The Protein Interaction Landscape of the Human CMGC Kinase Group

Abstract

Cellular information processing via reversible protein phosphorylation requires tight control of the localization, activity, and substrate specificity of protein kinases, which to a large extent is accomplished by complex formation with other proteins. Despite their critical role in cellular regulation and pathogenesis, protein interaction information is available for only a subset of the 518 human protein kinases. Here we present a global proteomic analysis of complexes of the human CMGC kinase group. In addition to subgroup-specific functional enrichment and modularity, the identified 652 high-confidence kinase-protein interactions provide a specific biochemical context for many poorly studied CMGC kinases. Furthermore, the analysis revealed a kinase-kinase subnetwork and candidate substrates for CMGC kinases. Finally, the presented interaction proteome uncovered a large set of interactions with proteins genetically linked to a range of human diseases, including cancer, suggesting additional routes for analyzing the role of CMGC kinases in controlling human disease pathways.

Cell Reports, 3 (4)

ISSN:2666-3864

ISSN:2211-1247

Countries
Switzerland, Finland
Keywords

Proteome, Transcription, Genetic, SX12 PhosphoNetX, QH301-705.5, INTERACTION NETWORK, STATISTICAL-MODEL, Protein Serine-Threonine Kinases, BETA-CATENIN, Cell Line, Substrate Specificity, PATHWAY, SX00 SystemsX.ch, 1300 General Biochemistry, Genetics and Molecular Biology, Tandem Mass Spectrometry, REVEALS, Humans, Protein Interaction Maps, Biology (General), PHOSPHORYLATION, 3-M SYNDROME, Biochemistry, cell and molecular biology, Chromatography, High Pressure Liquid, TFIIH, MUTATIONS, Glycogen Synthase Kinases, MASS-SPECTROMETRY, Protein-Tyrosine Kinases, Cyclin-Dependent Kinases, 570 Life sciences; biology, Mitogen-Activated Protein Kinases

  • BIP!
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    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    191
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 1%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Top 1%
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
191
Top 1%
Top 10%
Top 1%
Green
gold