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Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity

Authors: Ceron, Julian; Rual, Jean-François; Chandra, Abha; Dupuy, Denis; Vidal, Marc; van den Heuvel, Sander;

Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity

Abstract

AbstractBackgroundTheretinoblastomatumor suppressor (Rb) acts in a conserved pathway that is deregulated in most human cancers. Inactivation of the single Rb-related gene inCaenorhabditis elegans, lin-35, has only limited effects on viability and fertility, yet causes changes in cell-fate and cell-cycle regulation when combined with inactivation of specific other genes. For instance,lin-35Rb is a synthetic multivulva (synMuv) class B gene, which causes a multivulva phenotype when inactivated simultaneously with a class A or C synMuv gene.ResultsWe used the ORFeome RNAi library to identify genes that interact withC. elegans lin-35Rb and identified 57 genes that showed synthetic or enhanced RNAi phenotypes inlin-35mutants as compared torrf-3anderi-1RNAi hypersensitive mutants. Based on characterizations of a deletion allele, the syntheticlin-35interactorzfp-2was found to suppress RNAi and to cooperate withlin-35Rb in somatic gonad development. Interestingly, ten splicing-related genes were found to function similar tolin-35Rb, as synMuv B genes that prevent inappropriate vulval induction. Partial inactivation of specific spliceosome components revealed further similarities withlin-35Rb functions in cell-cycle control, transgene expression and restricted expression of germline granules.ConclusionWe identified an extensive series of candidatelin-35Rb interacting genes and validatedzfp-2as a novellin-35synthetic lethal gene. In addition, we observed a novel role for a subset of splicing components inlin-35Rb-controlled processes. Our data support novel hypotheses about possibilities for anti-cancer therapies and multilevel regulation of gene expression.

Keywords

570, 610, Gene Expression Regulation, Developmental, Zinc Fingers, Retinoblastoma Protein, Vulva, Repressor Proteins, Biologie/Milieukunde (BIOL), Phenotype, Spliceosomes, Animals, Female, RNA Interference, RNA, Helminth, Caenorhabditis elegans, Caenorhabditis elegans Proteins, Genes, Helminth, Developmental Biology, Research Article, RNA, Double-Stranded

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
99
Top 10%
Top 10%
Top 10%
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gold