Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Project deliverable . 2022
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Project deliverable . 2022
License: CC BY
Data sources: Datacite
versions View all 3 versions
addClaim

This Research product is the result of merged Research products in OpenAIRE.

You have already added 0 works in your ORCID record related to the merged Research product.

ELIXIR-CONVERGE D8.5 Data access points and tools

Authors: Cochrane, Guy; Cummins, Carla; Rahman, Nadim; Ventouratou, Marianna;

ELIXIR-CONVERGE D8.5 Data access points and tools

Abstract

Within the scope of deliverable 8.5 which was to enhance access to the COVID-19 Data Portal data, we developed the following data access support tools and services: COVID-19 Data Portal API: a proxy layer on top of EBI search pulling together a diverse range of resources into a single search service. COVID-19 Data Portal Download: an interactive download tool, allowing users to select different formats for metadata and data downloads. OmicsDI Indexing Service: an integrated and open source platform which indexes sources external to EBI and enables display on the COVID-19 Data Portal. Two ELIXIR core resources have been indexed: Cellosaurus and HPA. Covid-19 Data Portal File Downloader Tool: a user runnable tool for downloading all host and viral sequence data from ENA (European Nucleotide Archive) as seen on the COVID-19 Data Portal. The tool can download data in different formats and can generate scripts that run interactively with local data syncing of COVID-19 data available on the Portal. Third-Party Tools: Open data sharing has led to the further development of additional open-source tools that provide support to the wider scientific community. As part of the COVID-19 Data Platform three main examples of such tools have been identified: the COVID-19 Viral Beacon, Nextrain's public phylogeny and report for INSDC-submitted consensus sequences, and Galaxy. GISAID Metadata Conversion Tool: to support users who have been sharing data with GISAID, this tool converts a metadata spreadsheet used during the GISAID submission process, to a sample XML file that is compatible with ENA���s programmatic submission process.

Keywords

Data Access, COVID-19, ELIXIR-CONVERGE, COVID-19 Data Portal, ELIXIR

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 18
    download downloads 12
  • 18
    views
    12
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
18
12
Green