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Blood
Article
Data sources: UnpayWall
Blood
Article . 2012 . Peer-reviewed
Data sources: Crossref
Blood
Article . 2013
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A tissue-specific chromatin loop activates the erythroid ankyrin-1 promoter

Authors: Ashley O, Yocum; Laurie A, Steiner; Nancy E, Seidel; Amanda P, Cline; Emily D, Rout; Jolinta Y, Lin; Clara, Wong; +3 Authors

A tissue-specific chromatin loop activates the erythroid ankyrin-1 promoter

Abstract

Abstract The human ankyrin-1 gene (ANK1) contains 3 tissue-specific alternative promoters. We have shown previously that the erythroid-specific ankyrin 1 (ANK1E) core promoter contains a 5′ DNase I hypersensitive site (HS) with barrier insulator function that prevents gene silencing in vitro and in vivo. Mutations in the ANK1E barrier region lead to decreased ANK1 mRNA levels and hereditary spherocytosis. In this report, we demonstrate a second ANK1E regulatory element located in an adjacent pair of DNase I HS located 5.6 kb 3′ of the ANK1E promoter at the 3′ boundary of an erythroid-specific DNase I–sensitive chromatin domain. The 3′ regulatory element exhibits enhancer activity in vitro and in transgenic mice, and it has the histone modifications associated with an enhancer element. One of the ANK1E 3′HS contains an NF-E2 binding site that is required for enhancer function. We show that a chromatin loop brings the 3′ enhancer and NF-E2 into proximity with the 5′ barrier region including the ANK1E core promoter. These observations demonstrate a model for the tissue-specific activation of alternative promoters that may be applicable to the ∼ 30% of mammalian genes with alternative promoters that exhibit distinct expression patterns.

Keywords

Ankyrins, Binding Sites, Mice, Transgenic, Chromatin, Histones, Mice, Enhancer Elements, Genetic, Organ Specificity, Cell Line, Tumor, NF-E2 Transcription Factor, p45 Subunit, Animals, Deoxyribonuclease I, Humans, Protein Isoforms, Insulator Elements, 5' Untranslated Regions, K562 Cells, Promoter Regions, Genetic, 3' Untranslated Regions, Protein Binding

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
10
Average
Average
Average
bronze