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Journal of General Virology
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PubMed Central
Other literature type . 2013
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Journal of General Virology
Article . 2013 . Peer-reviewed
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Journal of General Virology
Article . 2013 . Peer-reviewed
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Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types

Authors: McIntyre, Chloe L.; Knowles, Nick J.; Simmonds, Peter;

Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types

Abstract

Human rhinoviruses (HRVs) frequently cause mild upper respiratory tract infections and more severe disease manifestations such as bronchiolitis and asthma exacerbations. HRV is classified into three species within the genusEnterovirusof the familyPicornaviridae. HRV species A and B contain 75 and 25 serotypes identified by cross-neutralization assays, although the use of such assays for routine HRV typing is hampered by the large number of serotypes, replacement of virus isolation by molecular methods in HRV diagnosis and the poor or absent replication of HRV species C in cell culture. To address these problems, we propose an alternative, genotypic classification of HRV-based genetic relatedness analogous to that used for enteroviruses. Nucleotide distances between 384 complete VP1 sequences of currently assigned HRV (sero)types identified divergence thresholds of 13, 12 and 13 % for species A, B and C, respectively, that divided inter- and intra-type comparisons. These were paralleled by 10, 9.5 and 10 % thresholds in the larger dataset of >3800 VP4 region sequences. Assignments based on VP1 sequences led to minor revisions of existing type designations (such as the reclassification of serotype pairs, e.g. A8/A95 and A29/A44, as single serotypes) and the designation of new HRV types A101–106, B101–103 and C34–C51. A protocol for assignment and numbering of new HRV types using VP1 sequences and the restriction of VP4 sequence comparisons to type identification and provisional type assignments is proposed. Genotypic assignment and identification of HRV types will be of considerable value in the future investigation of type-associated differences in disease outcomes, transmission and epidemiology.

Country
United Kingdom
Related Organizations
Keywords

Molecular Epidemiology, ACUTE OTITIS-MEDIA, ORIGINAL CLINICAL SPECIMENS, Genotype, Rhinovirus, Animal, RESPIRATORY-TRACT INFECTIONS, Molecular Sequence Data, CHILDREN, Sequence Analysis, DNA, TRANSPLANT RECIPIENTS, ENTEROVIRUS SEROTYPES, Viral Proteins, HRV-C, Virology, IDENTIFIED HUMAN RHINOVIRUS, Cluster Analysis, Humans, RNA, Viral, RECOMBINANT SEQUENCES, MAXIMUM-LIKELIHOOD

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
206
Top 1%
Top 1%
Top 1%
Green
hybrid