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eLife
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eLife
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Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals

Authors: Ho Yee Joyce Fung; Szu-Chin Fu; Yuh Min Chook;

Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals

Abstract

Nuclear export receptor CRM1 binds highly variable nuclear export signals (NESs) in hundreds of different cargoes. Previously we have shown that CRM1 binds NESs in both polypeptide orientations (Fung et al., 2015). Here, we show crystal structures of CRM1 bound to eight additional NESs which reveal diverse conformations that range from loop-like to all-helix, which occupy different extents of the invariant NES-binding groove. Analysis of all NES structures show 5-6 distinct backbone conformations where the only conserved secondary structural element is one turn of helix that binds the central portion of the CRM1 groove. All NESs also participate in main chain hydrogen bonding with human CRM1 Lys568 side chain, which acts as a specificity filter that prevents binding of non-NES peptides. The large conformational range of NES backbones explains the lack of a fixed pattern for its 3-5 hydrophobic anchor residues, which in turn explains the large array of peptide sequences that can function as NESs.

Keywords

Models, Molecular, Protein Conformation, alpha-Helical, QH301-705.5, Science, Active Transport, Cell Nucleus, Gene Expression, Receptors, Cytoplasmic and Nuclear, nuclear transport, Karyopherins, Crystallography, X-Ray, Humans, Protein Interaction Domains and Motifs, Amino Acid Sequence, Biology (General), Cloning, Molecular, Cell Nucleus, Nuclear Export Signals, Binding Sites, Q, R, Exportin-1, nuclear export signal, Hydrogen Bonding, Biophysics and Structural Biology, Recombinant Proteins, NES, XPO1, Medicine, Protein Conformation, beta-Strand, Hydrophobic and Hydrophilic Interactions, Sequence Alignment, Protein Binding

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
69
Top 10%
Top 10%
Top 1%
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gold