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Proceedings of the National Academy of Sciences
Article . 2010 . Peer-reviewed
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Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase

Authors: Peng, Gong; Olve B, Peersen;

Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase

Abstract

Positive-strand RNA viruses include a large number of human and animal pathogens whose essential RNA-dependent RNA polymerases (RdRPs) share a structurally homologous core with an encircled active site. RdRPs are targets for antiviral drug development, but these efforts are hindered by limited structural information about the RdRP catalytic cycle. To further our understanding of RdRP function, we assembled, purified, and then crystallized poliovirus elongation complexes after multiple rounds of nucleotide incorporation. Here we present structures capturing the active polymerase and its nucleotide triphosphate complexes in four distinct states, leading us to propose a six-state catalytic cycle involving residues that are highly conserved among positive-strand RNA virus RdRPs. The structures indicate that RdRPs use a fully prepositioned templating base for nucleotide recognition and close their active sites for catalysis using a novel structural rearrangement in the palm domain. The data also suggest that translocation by RDRPs may not be directly linked to the conformational changes responsible for active site closure and reopening.

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Keywords

Models, Molecular, Base Sequence, Sequence Homology, Amino Acid, Nucleotides, Protein Conformation, Molecular Sequence Data, Crystallography, X-Ray, RNA-Dependent RNA Polymerase, Recombinant Proteins, Protein Structure, Tertiary, Poliovirus, Viral Proteins, Catalytic Domain, Mutation, Biocatalysis, Humans, RNA, Viral, Amino Acid Sequence, Protein Binding

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    285
    popularity
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    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
285
Top 1%
Top 1%
Top 1%
bronze