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https://doi.org/10.17504/proto...
Article . 2020 . Peer-reviewed
License: CC BY
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Stranded Mapping from Oriented Long Reads v7

descriptionPublicationkeyboard_double_arrow_right Article 20 Oct 2020Publisher:Springer Science and Business Media LLCFunded by:WT | unidentified
Authors: David A Eccles;

doi: 10.17504/protocols.io.bnk6mcze

Stranded Mapping from Oriented Long Reads v7

Abstract

This protocol demonstrates how to map strand-oriented long reads to a genome, and visualise them in a genome browser. The general idea is to use minimap2 to create stranded BAM files, which are split for forward/reverse orientation then converted into BigWig format for display in a genome browser. Input(s): stranded fastq files (see protocol Preparing Reads for Stranded Mapping) a FASTA file containing the genome / sequence of interest. Output(s): Genome-mapped stranded BAM files Genome-mapped stranded BigWig files

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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