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[Conserved regions of potential ORF1 protein products of mobile elements and retroviral proteins, encoded by the gag gene].

Authors: A A, Kanapin; V A, Ivanov; Iu V, Il'in;

[Conserved regions of potential ORF1 protein products of mobile elements and retroviral proteins, encoded by the gag gene].

Abstract

Computer search for homology regions of retroelement ORF1 protein products and retroviral gag-encoded proteins was performed using nucleotide and protein sequences of 113 retrotransposons, conservative domains were found in amino acid sequences encoded by viral gene gag: 22 and 17 amino acid residues in capsid and nucleocapsid proteins, respectively. Similar regions were found in potential protein products of ORF1. Another conservative region was revealed by multiple alignment in amino acid sequences of potential protein products of ORF1 of mobile elements and in p19 matrix protein of some retroviruses; this region is different in mobile elements from different classes, but within each class it shows high similarity. The secondary structure of this region is an alpha-helix.

Keywords

Retroelements, Sequence Homology, Amino Acid, Protein Conformation, Molecular Sequence Data, Genes, gag, Recombinant Proteins, Open Reading Frames, Retroviridae, Animals, Humans, Amino Acid Sequence, Conserved Sequence

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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Average
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