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Genetic features of the Puumala virus (Hantaviridae: Orthohantavirus) identified in the Moscow region.

Authors: Ekaterina A. Blinova; Marat T. Makenov; Evgeny S. Morozkin; Ivan S. Kholodilov; Marina V. Fedorova; Olga B. Zhurenkova; German V. Roev; +2 Authors

Genetic features of the Puumala virus (Hantaviridae: Orthohantavirus) identified in the Moscow region.

Abstract

Puumala virus (family Hantaviridae, genus Orthohantavirus) is distributed in most regions of the European part of Russia. However, information about its genetic variants circulating on the territory of the Central Federal District is extremely scarce.Rodents' tissue samples were tested after reverse transcription by PCR for the presence of hantaviral RNA. The amplified fragments of the L segment were sequenced by the Sanger method. For two samples, sequences of all three segments were obtained using the NGS method. Phylogenetic trees were built in the MEGA-X software.Puumala virus was found in six samples. Based on the phylogenetic analysis of sequences of three segments, the obtained genetic variants belong to the sublineage previously designated as W-RUS.A genetic variant of the Puumala virus, belonging to the subline W-RUS, circulates on the territory of the Volokolamsk district of Moscow region.

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Keywords

puumala orthohantavirus, Orthohantavirus, Arvicolinae, sublineage w-rus, Animals, bank vole, phylogeography, Microbiology, Puumala virus, Moscow, QR1-502, Phylogeny

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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