The vector mosquitoes of dengue and chikungunya fever, Aedes aegypti and Aedes albopictus have adapted to feed on humans and undergo larval and pupal development in natural and artificial freshwater collections. Although several studies reported, still, much information is required to understand the successful survival of Aedes mosquitoes in small temporary containers. In an investigation conducted in the chikungunya affected areas of Kerala state, India, the presence of Bdelloid rotifer, Philodina in 95% of breeding habitats of Ae. aegypti and Ae. albopictus was recorded. The role of Philodina in the breeding containers was investigated. It was found that while in control the number of Philodina was found increasing in the water sample during the study period of seven days, the number found decreased in the containers with larvae of Aedes. The gut content analysis also confirmed the presence of the rotating wheel, corona of Philodina in some of the specimen suggests its role as major larval food.