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Exploration and characterization of the LarA superfamily: a superfamily of 2-hydroxy acid racemases and epimerases

Authors: Urdiain-Arraiza, Julian; Novel Enzymes 2023;

Exploration and characterization of the LarA superfamily: a superfamily of 2-hydroxy acid racemases and epimerases

Abstract

ɑ-Hydroxy acids are organic compounds omnipresent in the living world and can be considered as building blocks in organic synthesis. However, racemases and epimerases of ɑ-hydroxy acids are poorly known. Among them, lactate racemase (LarA) was shown to require a unique nickel-containing cofactor, the nickel-pincer nucleotide(NPN. Interestingly, LarA belongs to a superfamily of enzymes, the LarA superfamily, comprising 2121 LarA homologs (LarAHs) broadly distributed in bacterial and archaeal species. In this work, we explore and characterize the variety of reactions catalyzed by the LarA superfamily with the NPN cofactor. We discovered that LarA and other lactate racemases were active on very short chain ɑ-hydroxy acids in additionto lactate. Other phylogenetic groups of LarAHs were active on ɑ-hydroxy acids with short side chains, on malate, on ɑ-hydroxyglutarate, on bulky α-hydroxy acids or on gluconate. We also discovered a large phylogenetic group of wide spectrum ɑhydroxy acid racemases and epimerases that are active on 15 to 25 different ɑ-hydroxy acids. Some of these LarAHs could have industrial or biotechnological applications for the synthesis of rare ɑ-hydroxy acid isomers.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
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Green