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Emerging patterns and gene expression data.

Authors: Li, Jinyan; Wong, Limsoon;

Emerging patterns and gene expression data.

Abstract

One important purpose of conducting gene expression experiments is to understand the correlation of gene expression profiles to disease states. Based on the notion of emerging patterns and an entropy-oriented discretization method, we discover groups of genes that are correlated to disease states in a significant way. In each group, every member gene constrained by a specific expression interval, unanimously occurs only in one type of cells with a maximally large frequency, but never unanimously happens in the other types of cells. According to our studies on the colon tumor dataset, such gene groups (also called patterns) can reach a frequency of 90%, providing good insight into the correlation of gene expression profiles to disease states. The patterns can be used to correctly predict whether a new cell is normal or cancerous.

Keywords

entropy-based discretization, Gene Expression Profiling, Computational Biology, Genomics, Pattern Recognition, Automated, colon tumor prediction, classification, intervals, frequency, emerging patterns, Colonic Neoplasms, Databases, Genetic, Gene expression data, Humans, Algorithms

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
23
Average
Top 10%
Average
Related to Research communities
Cancer Research