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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Vitis vinifera cv. Corvina Gene Expression Atlas

Authors: FASOLI, Marianna; ZENONI, Sara; DAL SANTO, SILVIA; Paola Tononi; DELLEDONNE, Massimo; PEZZOTTI, Mario;

Vitis vinifera cv. Corvina Gene Expression Atlas

Abstract

The grapevine Vitis vinifera is in economic terms the most important fruit crop in the world. The French-Italian Public Consortium completed a 12X Whole Genome Shotgun sequence, providing the foundation for a significant expansion in grapevine functional genomics research. The expression microarrays assess the transcriptome by simultaneously measuring the expression of about 30,000 genes. A microarray technology developed by Roche-NimbleGen 12x135K enables hybridization of up to 12 independent samples on a single slide. We analyzed global gene expression during development of the plant Vitis vinifera cv. Corvina (clone 48) in samples covering many stages and different organs. Sampling entailed the collection of 16 organs, split in different stages of development. Including all biological replicates, this project entailed the hybridization of about 162 samples. The expression atlas pointed out the expression of almost 90% of the grape transcriptome. The number of expressed genes in a tissue or organ was observed to change with respect to the developmental stage and some of the tissues showed the expression of specific genes. The correlation between tissues and organs was revealed to cluster in relation to metabolism rather than organ identity. Such a gene expression atlas should serve as a resource to observe the expression levels of transcription factor genes and signal transduction components, compared to those of metabolic genes. Moreover, it will explain if specialized expression patterns could be caused by preferential use of entire gene families in specific developmental processes.

Country
Italy
Related Organizations
Keywords

grapevine; transcriptome atlas

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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