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Article . 2009
License: CC BY NC SA
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Proceedings of the National Academy of Sciences
Article . 2009 . Peer-reviewed
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Dynamics of one-state downhill protein folding

Authors: Li, Peng; Oliva, Fabiana Yolanda; Naganathan, Athi N.; Muñoz, Victor;

Dynamics of one-state downhill protein folding

Abstract

The small helical protein BBL has been shown to fold and unfold in the absence of a free energy barrier according to a battery of quantitative criteria in equilibrium experiments, including probe-dependent equilibrium unfolding, complex coupling between denaturing agents, characteristic DSC thermogram, gradual melting of secondary structure, and heterogeneous atom-by-atom unfolding behaviors spanning the entire unfolding process. Here, we present the results of nanosecond T-jump experiments probing backbone structure by IR and end-to-end distance by FRET. The folding dynamics observed with these two probes are both exponential with common relaxation times but have large differences in amplitude following their probe-dependent equilibrium unfolding. The quantitative analysis of amplitude and relaxation time data for both probes shows that BBL folding dynamics are fully consistent with the one-state folding scenario and incompatible with alternative models involving one or several barrier crossing events. At 333 K, the relaxation time for BBL is 1.3 μs, in agreement with previous folding speed limit estimates. However, late folding events at room temperature are an order of magnitude slower (20 μs), indicating a relatively rough underlying energy landscape. Our results in BBL expose the dynamic features of one-state folding and chart the intrinsic time-scales for conformational motions along the folding process. Interestingly, the simple self-averaging folding dynamics of BBL are the exact dynamic properties required in molecular rheostats, thus supporting a biological role for one-state folding.

Country
Argentina
Keywords

Protein Denaturation, Protein Folding, Biophysics, Temperature, LANDSCAPE TOPOGRAPHY, Protein dynamics, PROTEIN DYNAMICS, Folding landscape, Downhill folding, Kinetics, Motion, Spectroscopy, Fourier Transform Infrared, DOWNHILL FOLDING, https://purl.org/becyt/ford/1.4, Fluorescence Resonance Energy Transfer, FOLDING LANDSCAPE, https://purl.org/becyt/ford/1, Landscape topography

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
87
Top 10%
Top 10%
Top 1%
67
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